{ "_id": "6a1f1dccb401979e7341fc79", "Package": "ribiosExpression", "Type": "Package", "Title": "Data Structures and Utilities for Gene Expression Analysis", "Version": "1.3.5", "Authors@R": "person(given = \"Jitao David\",\nfamily = \"Zhang\",\nrole = c(\"aut\", \"cre\"),\nemail = \"jitao_david.zhang@roche.com\",\ncomment = c(ORCID=\"0000-0002-3085-0909\"))", "Description": "Provides data structures and utility functions for gene\nexpression analysis. It includes the DesignContrast class for\nrepresenting study designs and contrasts used in differential\nexpression analysis, functions for importing and exporting\nexpression data in GCT/CLS formats, tools for probeset\nsummarization and filtering, and interfaces to limma-based\ndifferential gene expression workflows. The package works with\nBiobase ExpressionSet objects and integrates with the limma\nframework.", "License": "GPL-3", "Encoding": "UTF-8", "Additional_repositories": "https://bedapub.r-universe.dev", "URL": "https://github.com/bedapub/ribiosExpression", "BugReports": "https://github.com/bedapub/ribiosExpression/issues", "biocViews": "GeneExpression, DifferentialExpression, Microarray,\nDataImport, Visualization", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.3", "Collate": "'AllClasses.R' 'AllGenerics.R' 'AllMethods.R'\n'DesignContrast.R' 'annotate.R' 'assertFullRank.R' 'filter.R'\n'fixDesignMatrixColnames.R' 'import.R' 'io_gct_cls.R'\n'io_gmt.R' 'io_tab.R' 'limmaDgeTable.R' 'mergeEset.R'\n'obsolete.R' 'readAnnotationFile.R' 'readFKtable.R'\n'removeAllZeroVar.R' 'ribiosExpression-package.R'\n'ribiosExpressionSet.R' 'sniffFeatureType.R' 'splitPCA.R'\n'summarizeProbesets.R' 'summarizeSamples.R' 'transformations.R'\n'truncateDgeTable.R' 'writeVarMetadata.R'", "Remotes": [ 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