{ "_id": "6a1ed9bbb401979e7340f3c6", "Package": "ribiosGraph", "Type": "Package", "Title": "Manipulate and Visualize Graphs in the 'ribios' Software Suite", "Version": "1.1.0", "Date": "2026-01-24", "Authors@R": "c(person(given = \"Jitao David\",\nfamily = \"Zhang\",\nrole = c(\"aut\", \"cre\"),\nemail = \"jitao_david.zhang@roche.com\",\ncomment = c(ORCID=\"0000-0002-3085-0909\")))", "Description": "Tools to manipulate and visualize graphs (networks) for\ncomputational biology in drug discovery, for instance functions\nfor creating bipartite graphs and for interactive\nvisualizations. Zhang (2025)\n.", "License": "GPL-3", "URL": "https://github.com/bedapub/ribiosGraph", "BugReports": "https://github.com/bedapub/ribiosGraph/issues", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev libssl-dev", "Repository": "https://bedapub.r-universe.dev", "Date/Publication": "2026-02-18 09:32:18 UTC", "RemoteUrl": "https://github.com/bedapub/ribiosGraph", "RemoteRef": "HEAD", "RemoteSha": "9f4e984e20bcef244c42dce2fb37326c1a2c1e16", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-20 09:18:23 UTC", "User": "root" }, "Author": "Jitao David Zhang [aut, cre] (ORCID:\n)", "Maintainer": "Jitao David Zhang ", "MD5sum": "a042f7083de9d5f736eb9e6ff1de4928", "_user": "bedapub", "_type": "src", "_file": "ribiosGraph_1.1.0.tar.gz", "_fileid": "7be0cc8a5bc54ccf8ca4a1467f4c7a5af846b88c478a18060d75c6835c476304", "_filesize": 218201, "_sha256": "7be0cc8a5bc54ccf8ca4a1467f4c7a5af846b88c478a18060d75c6835c476304", "_created": "2026-05-20T09:18:23.000Z", "_published": "2026-06-02T13:25:15.476Z", "_distro": "noble", "_jobs": [ { "job": 79081049613, "time": 149, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7106097343" }, { "job": 79081050286, "time": 175, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7106106600" }, { "job": 79081050545, "time": 101, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7106078441" }, { "job": 79081050640, "time": 102, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7106078338" }, { "job": 79081049421, "time": 206, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7106039120" }, { "job": 79081049014, "time": 127, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7358946217" }, { "job": 79081050147, "time": 89, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7106074026" }, { "job": 79081050407, "time": 100, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7106077857" }, { "job": 79081049706, "time": 89, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7106074334" } ], "_buildurl": "https://github.com/r-universe/bedapub/actions/runs/26153139875", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bedapub/ribiosGraph", "_commit": { "id": "9f4e984e20bcef244c42dce2fb37326c1a2c1e16", "author": "Jitao David Zhang ", "committer": "GitHub ", "message": "Merge pull request #6 from bedapub/devel\n\nadd return values for list2incidenceMatrix", "time": 1771407138 }, "_maintainer": { "name": "Jitao David Zhang", "email": "jitao_david.zhang@roche.com", "login": "accio", "description": "A Computational Biologist in Drug Discovery", "uuid": 1397024, "orcid": "0000-0002-3085-0909" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4.0", "role": "Depends" }, { "package": "igraph", "role": "Depends" }, { "package": "magrittr", "role": "Imports" }, { "package": "plotly", "role": "Imports" }, { "package": "ribiosUtils", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "bedapub", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-02", "n": 1 }, { "week": "2026-04", "n": 1 }, { "week": "2026-05", "n": 1 }, { "week": "2026-06", "n": 1 }, { "week": "2026-07", "n": 2 }, { "week": "2026-08", "n": 1 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "accio", "count": 61, "uuid": 1397024 } ], "_userbio": { "uuid": 39733410, "type": "organization", "name": "BEDApub", "description": "Roche Pharma Research and Early Development, Pharmaceutical Sciences, Roche Innovation Center Basel, F. Hoffmann-La Roche Ltd, Grenzacherstrasse 124, 4070 Basel" }, "_downloads": { "count": 145, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ribiosGraph" }, "_devurl": "https://github.com/bedapub/ribiosgraph", "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/ribiosGraph.html", "manual.pdf" ], "_homeurl": "https://github.com/bedapub/ribiosgraph", "_realowner": "bedapub", "_cranurl": true, "_releases": [ { "version": "1.1.0", "date": "2026-02-20" } ], "_exports": [ "bipartite_graph_from_data_frame", "exportGML", "incidence2bipartite", "layout_as_bipartiteLR", "list2incidenceMatrix", "plotlyBipartiteGraph" ], "_help": [ { "page": "bipartite_graph_from_data_frame", "title": "Create a bipartite graph from data frame", "topics": [ "bipartite_graph_from_data_frame" ] }, { "page": "exportGML", "title": "Export igraph object to GML, friendly to Cytoscape and yEd", "topics": [ "exportGML" ] }, { "page": "incidence2bipartite", "title": "Build a bipartite graph with an incidence matrix", "topics": [ "incidence2bipartite" ] }, { "page": "layout_as_bipartiteLR", "title": "Layout a bipartite graph from left to right", "topics": [ "layout_as_bipartiteLR" ] }, { "page": "list2incidenceMatrix", "title": "Convert a list of character strings into an incidence matrix", "topics": [ "list2incidenceMatrix" ] }, { "page": "plotlyBipartiteGraph", "title": "Plot a bipartite graph using plot_ly", "topics": [ "plotlyBipartiteGraph" ] } ], "_readme": "https://github.com/bedapub/ribiosGraph/raw/HEAD/README.md", "_rundeps": [ "askpass", "base64enc", "bslib", "cachem", "cli", "cpp11", "crosstalk", "curl", "data.table", "digest", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "fs", "generics", "ggplot2", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httr", "igraph", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "magrittr", "Matrix", "memoise", "mime", "openssl", "otel", "pillar", "pkgconfig", "plotly", "promises", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "ribiosUtils", "rlang", "rmarkdown", "S7", "sass", "scales", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "withr", "xfun", "yaml" ], "_score": 3.4771212547196626, "_indexed": true, "_nocasepkg": "ribiosgraph", "_universes": [ "bedapub", "accio" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-05-20T09:20:45.000Z", "distro": "noble", "commit": "9f4e984e20bcef244c42dce2fb37326c1a2c1e16", "fileid": "e4e246ce04b1cfc21231402df84d8b54323b4fa86e0137c6fe7dfd527fb690e2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bedapub/actions/runs/26153139875" }, { "r": "4.6.0", "os": "linux", "version": "1.1.0", "date": "2026-05-20T09:21:08.000Z", "distro": "noble", "commit": "9f4e984e20bcef244c42dce2fb37326c1a2c1e16", "fileid": "9d6139f79e90c99fcb503c232a50ccc8507330b4ee6e461088457d811565f088", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bedapub/actions/runs/26153139875" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-05-20T09:20:04.000Z", "commit": "9f4e984e20bcef244c42dce2fb37326c1a2c1e16", "fileid": "a2e5bdaa3477adf2a618c39f0af08510fb43f5615eba605c928fd87458bcfb20", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bedapub/actions/runs/26153139875" }, { "r": "4.6.0", "os": "mac", "version": "1.1.0", "date": "2026-05-20T09:20:02.000Z", "commit": "9f4e984e20bcef244c42dce2fb37326c1a2c1e16", "fileid": "2f2f45178907e55a32bc17ea5b2035f3ebdf10cfe219cc0b9fa5b9b5063cf237", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bedapub/actions/runs/26153139875" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-05-20T09:19:41.000Z", "commit": "9f4e984e20bcef244c42dce2fb37326c1a2c1e16", "fileid": "4a01de4484cbb9c115d1b2eb219fca33d130b188fedfe7f594b5ae1d4ffe18f2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bedapub/actions/runs/26153139875" }, { "r": "4.5.3", "os": "win", "version": "1.1.0", "date": "2026-05-20T09:19:51.000Z", "commit": "9f4e984e20bcef244c42dce2fb37326c1a2c1e16", "fileid": "16ff39b69fb19750965360a11074a5e199ca1e4667835a48b0590e2e4c00a0d0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bedapub/actions/runs/26153139875" }, { "r": "4.6.0", "os": "win", "version": "1.1.0", "date": "2026-05-20T09:19:41.000Z", "commit": "9f4e984e20bcef244c42dce2fb37326c1a2c1e16", "fileid": "b50299d984c8050497c3bf9a35f58f185d6b9cc6c86e226e94ac8ee6414eefff", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bedapub/actions/runs/26153139875" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0", "date": "2026-06-02T13:24:58.000Z", "commit": "9f4e984e20bcef244c42dce2fb37326c1a2c1e16", "fileid": "58bf317edbb880e7e5a886e91e6770ac6493bd9108bce35f4f2fe5f4bbe9d927", "status": "success", "buildurl": "https://github.com/r-universe/bedapub/actions/runs/26153139875" } ] }