Package: ribiosAnnotation
Type: Package
Title: Annotation of Genes, RNAs, and Proteins in 'ribios'
Version: 3.8.0
Date: 2026-02-15
Authors@R: person("Jitao David", "Zhang",
    email = "jitao_david.zhang@roche.com",
    role = c("aut", "cre"),
    comment = c(ORCID = "0000-0002-3085-0909"))
Description: Retrieves annotation information of genomic features
        including genes, RNAs, and proteins from databases. It supports
        querying by gene identifiers, gene symbols, UniProt accessions,
        Ensembl identifiers, and RefSeq identifiers, as well as mapping
        orthologs across species using NCBI data.
Depends: R (>= 4.1.0)
Imports: ribiosUtils, dplyr, tidyr, rjson, magrittr, mongolite
Suggests: testthat
LazyData: true
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.3.3
Additional_repositories: https://bedapub.r-universe.dev
Collate: 'sortAnnotationByQuery.R' 'removeEnsemblVersion.R' 'utils.R'
        'annotateAnyIDs.R' 'annotateHumanOrthologsWithNCBI.R'
        'appendHumanOrthologsWithNCBI.R' 'annotateGeneIDs.R'
        'annotateGeneSymbols.R' 'annotateProbesets.R'
        'annotateProteinGroups.R' 'annotateTaxID.R'
        'annotateUniprotAccession.R' 'ensembl.R' 'featureID.R'
        'formatIn.R' 'gti2bioc.R' 'humanOrthologsByTaxID.R'
        'ribiosAnnotation-package.R' 'taxID.R' 'uniprotByTaxID.R'
Remotes: github::bedapub/ribiosUtils
Config/pak/sysreqs: libicu-dev libssl-dev libsasl2-dev
Repository: https://bedapub.r-universe.dev
Date/Publication: 2026-02-15 13:42:58 UTC
RemoteUrl: https://github.com/bedapub/ribiosAnnotation
RemoteRef: HEAD
RemoteSha: 331cc913da0be187571e8dfce47302950aeda7eb
NeedsCompilation: no
Packaged: 2026-06-15 16:02:40 UTC; root
Author: Jitao David Zhang [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3085-0909>)
Maintainer: Jitao David Zhang <jitao_david.zhang@roche.com>