Package: ribiosGSEA
Type: Package
Title: Gene-Set Enrichment Analysis Tools in 'ribios'
Version: 1.6.8
Date: 2026-06-12
Authors@R: 
  c(person(given = "Jitao David",
         family = "Zhang",
         role = c("aut", "cre"),
         email = "jitao_david.zhang@roche.com",
         comment = c(ORCID="0000-0002-3085-0909")),
    person(given = "Balasz",
           family = "Banfai",
           role = "ctb"),
    person("F.Hoffmann-La Roche AG", role="cph"))
Description: Provides data structure and functions for gene-set
        analysis and post-processing of analysis results.
Depends: R (>= 4.1.0)
Imports: Rcpp, methods, ribiosIO, ribiosUtils(>= 1.1-9),
        ribiosExpression, ribiosPlot, ribiosNGS, XML, parallel, limma,
        Biobase, BioQC (>= 1.13.2), edgeR, dplyr, data.table, httr,
        jsonlite, gage, readr, graph, igraph
Suggests: testthat, knitr, rmarkdown
License: GPL-3
Collate: 'ribiosGSEA-package.R' 'AllClasses.R' 'AllGenerics.R'
        'AllMethods.R' 'AnnoBroadGseaResItem.R' 'GeMS.R'
        'RcppExports.R' 'utils.R' 'biosCamera.R' 'buildBroadGSEAcomm.R'
        'gse.R' 'doGse.R' 'fingerprint.R' 'fisher.R' 'fishersMethod.R'
        'geneSetPerm.R' 'gmt.R' 'gseaScores.R' 'kendallW.R'
        'kmeansGenesets.R' 'list2mat.R' 'parseBroadGSEA.R'
        'parseTopTable.R' 'post-processing.R'
        'prettyRonetGenesetNames.R' 'strWithNumber.R'
LinkingTo: Rcpp
VignetteBuilder: knitr
Encoding: UTF-8
Additional_repositories: https://bedapub.r-universe.dev
URL: https://github.com/bedapub/ribiosGSEA
BugReports: https://github.com/bedapub/ribiosGSEA/issues
Remotes: github::bedapub/ribiosIO, github::bedapub/ribiosPlot,
        github::bedapub/ribiosExpression, github::bedapub/ribiosNGS
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev perl libsasl2-dev libnode-dev
        libx11-dev zlib1g-dev
Repository: https://bedapub.r-universe.dev
Date/Publication: 2026-06-14 16:37:10 UTC
RemoteUrl: https://github.com/bedapub/ribiosGSEA
RemoteRef: HEAD
RemoteSha: 5c211c140d3d0edfc56a49b55295d33c6b09227e
NeedsCompilation: yes
Packaged: 2026-06-15 16:04:19 UTC; root
Author: Jitao David Zhang [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3085-0909>),
  Balasz Banfai [ctb],
  F.Hoffmann-La Roche AG [cph]
Maintainer: Jitao David Zhang <jitao_david.zhang@roche.com>