NEWS
ribiosGraph 1.1.0 (2026-02-20)
- Initial CRAN submission
- Package prepared for CRAN submission with comprehensive documentation
- Depends on ribiosUtils (on CRAN) and igraph
ribiosGraph 1.0.11
- Add TextMining_I2E and manual as supported databases
ribiosGraph 1.0.10
- Add aux function
fixNodeLabel to fix dash-only gene labels
ribiosGraph 1.0.9
- Add ronet-evaluation.Rscript for internal evaluation
- Bit-flags can specify which databases to use
ribiosGraph 1.0.8
- ronet.Rscript: bug fix for input GeneID/GeneSymbols trimming
ribiosGraph 1.0.7
- ronet.Rscript: add "-genesymbol" option
- Output graph converts GeneIDs to GeneSymbols
ribiosGraph 1.0.6
exportGML: fixed node indices starting from 0 instead of 1
ribiosGraph 1.0.5
- ronet.Rscript: package namespace "graph" appended before edges function
ribiosGraph 1.0.4
- Add pathSigTree.Rscript for pathway signature tree visualization
ribiosGraph 1.0.3
exportGML refactored into ribiosNetwork package
ribiosGraph 1.0.2
- ronet.Rscript: output isInput attribute of nodes
ribiosGraph 1.0.1
- ronet.Rscript: support edge type and automatic output format recognition
ribiosGraph 1.0.0
- Initial release of ribiosGraph (originally ribiosNetwork)
- Add ronet.Rscript and testing files