NEWS

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ribiosGraph 1.1.0 (2026-02-20)

• Initial CRAN submission
• Package prepared for CRAN submission with comprehensive documentation
• Depends on ribiosUtils (on CRAN) and igraph

ribiosGraph 1.0.11

• Add TextMining_I2E and manual as supported databases

ribiosGraph 1.0.10

• Add aux function fixNodeLabel to fix dash-only gene labels

ribiosGraph 1.0.9

• Add ronet-evaluation.Rscript for internal evaluation
• Bit-flags can specify which databases to use

ribiosGraph 1.0.8

• ronet.Rscript: bug fix for input GeneID/GeneSymbols trimming

ribiosGraph 1.0.7

• ronet.Rscript: add "-genesymbol" option
• Output graph converts GeneIDs to GeneSymbols

ribiosGraph 1.0.6

• exportGML: fixed node indices starting from 0 instead of 1

ribiosGraph 1.0.5

• ronet.Rscript: package namespace "graph" appended before edges function

ribiosGraph 1.0.4

• Add pathSigTree.Rscript for pathway signature tree visualization

ribiosGraph 1.0.3

• exportGML refactored into ribiosNetwork package

ribiosGraph 1.0.2

• ronet.Rscript: output isInput attribute of nodes

ribiosGraph 1.0.1

• ronet.Rscript: support edge type and automatic output format recognition

ribiosGraph 1.0.0

• Initial release of ribiosGraph (originally ribiosNetwork)
• Add ronet.Rscript and testing files