Changes in version 1.1.0 (2026-02-20)                  

  - Initial CRAN submission
  - Package prepared for CRAN submission with comprehensive
    documentation
  - Depends on ribiosUtils (on CRAN)

                       Changes in version 1.0.43                        

  - loadObject allows the obj option to take the value NULL

                       Changes in version 1.0.42                        

  - Improve read_gct.c by providing meaningful error messages when file
    is inconsistent

                       Changes in version 1.0.41                        

  - read_rocheNGS_exprs renamed to read_biokit_exprs
  - read_biokit_exprs updated for new Biokit pipeline output files
  - Add read_trimmed_lines
  - Add loadObject

                       Changes in version 1.0.36                        

  - read_rocheNGS_exprs: skip the header line

                       Changes in version 1.0.35                        

  - readMatrix added option 'as.matrix'

                       Changes in version 1.0.34                        

  - Add parameter to control NA format in write_gct

                       Changes in version 1.0.32                        

  - Start using roxygen2
  - Add writeMatrix and readMatrix for numerical matrix I/O

                       Changes in version 1.0.31                        

  - writeList renamed to write.tableList
  - C-level functions renamed to avoid confusion with R function names

                       Changes in version 1.0.30                        

  - Add writeList function to write a series of tables

                       Changes in version 1.0.28                        

  - read_gmt_list uses gene-set names as names of the returning list

                       Changes in version 1.0.27                        

  - write_gmt supports simple lists as input

                       Changes in version 1.0.26                        

  - read_gct_matrix prints detailed error messages for column mismatches

                       Changes in version 1.0.25                        

  - Add function read_pheno to import pheno data information

                       Changes in version 1.0.24                        

  - Bug fix: read_gmt_list supports gene sets without any genes

                       Changes in version 1.0.23                        

  - Bug fixes for read_exprs_matrix
  - read_exprs_matrix reads in description of gct files

                       Changes in version 1.0.22                        

  - write_gct handles 0-row matrix

                       Changes in version 1.0.21                        

  - read_exprs_matrix handles non-numeric second column

                       Changes in version 1.0.20                        

  - Add new function read_chip to read chip files

                       Changes in version 1.0.19                        

  - Add new function write_gmt_list to export GMT lists

                       Changes in version 1.0.18                        

  - Add read_cls for reading CLS files

                       Changes in version 1.0.17                        

  - write_gct uses the 'desc' attribute of input matrix if available

                       Changes in version 1.0.16                        

  - read_exprs_matrix uses more stringent grep to detect GCT files

                       Changes in version 1.0.15                        

  - Add write_gct function to export Matrix in GCT format
  - read_exprs_matrix does not interpret hashes as comment char

                       Changes in version 1.0.14                        

  - read_gct C file: second line less strict, allowing empty cells

                       Changes in version 1.0.13                        

  - isGctFile is less strict regarding spaces

                       Changes in version 1.0.12                        

  - Add isGctFile function to determine GCT file format compliance

                       Changes in version 1.0.11                        

  - Documentation improvements for read_gmt_list

                       Changes in version 1.0.10                        

  - Cleanup src/Makevar: remove hard-coded dependencies

                        Changes in version 1.0.9                        

  - Add read_fasta and write_fasta for FASTA-format sequence files

                        Changes in version 1.0.8                        

  - C-function read_gct supports both file and character string input
  - Add read_gctstr_matrix for parsing GCT format strings

                        Changes in version 1.0.7                        

  - Add loadFile from the ribios package

                        Changes in version 1.0.6                        

  - Package cleanup and benchmarking

                        Changes in version 1.0.5                        

  - Add man pages for read_gmt_list and iofile

                        Changes in version 1.0.4                        

  - Add read_gmt_list function to read GMT files

                        Changes in version 1.0.3                        

  - Add correct version of iofile

                        Changes in version 1.0.2                        

  - read_exprs_matrix supports full table and duplicated row names

                        Changes in version 1.0.1                        

  - Add read_exprs_matrix for importing expression matrix from file
  - C routine read_gct checks second line with arrayMax

                        Changes in version 1.0.0                        

  - Initial release: refactor read_gct from ribiosExpression