NEWS
ribiosPlot 1.3.0 (2026-02-25)
- Initial CRAN submission
- Package prepared for CRAN submission with comprehensive documentation
- Depends on ribiosUtils (on CRAN)
- Optional Vennerable integration for users who install it separately
ribiosPlot 1.1.30
- Add
royalredgrayblue and royalbluegrayred color palettes
plotPCA: xlim/ylim parameters auto-adjust for text labels
- Add function
getLims to get xlim/ylim values from vectors
ribiosPlot 1.1.29
compactPar more flexible to accept and pass parameters to par
ribiosPlot 1.1.28
- Fix bug in heat function: return (n)
ribiosPlot 1.1.26
- Add
compactTrellis() and setCompactTrellis() for compact publication figures
- Add function
p2asterisk to map p values to asterisk symbols
- Use roxygen2 for documentation
ribiosPlot 1.1.25
- Add function
fcbrewer for factor-matching colors
- Improved manual pages
- Rename
sqlayout to squareLayout
- Rename
compPar to compactPar
ribiosPlot 1.1.24
biosHeatmap: cex main size better guessed
ribiosPlot 1.1.23
- Add
intRange and squareLayout
pdf2png works on UDIS machine
ribiosPlot 1.1.22
- Add
histMat to visualize matrices with histograms
- Add
plotPCA
ribiosPlot 1.1.20
- Add
qHist and xclipHist histogram functions
ribiosPlot 1.1.19
- Add ribiosUtils to dependency list
ribiosPlot 1.1.18
- Add
pdf2png to convert PDF to PNG
ribiosPlot 1.1.17
- Add
cyanblackyellow and yellowblackyan color combinations
- Add
jitter.xyplot
ribiosPlot 1.1.16
brewer.pal.factor auto-adjusts color palette size
- PCA plotting functions refactored
ribiosPlot 1.1.15
- Update boxplot.Rscript with improved features
ribiosPlot 1.1.14
- Add
idev and ipdf functions for plotting in Rscripts
- Add
blackyellowred and blackgoldred color panels
ribiosPlot 1.1.13
- exprs-boxplot.Rscript: accepts tab-delimited and gct files
ribiosPlot 1.1.12
- exprs-boxplot.Rscript works with GCT files
ribiosPlot 1.1.11
- Bug fix:
boundNorm works with NAs
ribiosPlot 1.1.10
- Fix typos in
brewer.pal.factor and brewer.pal.factorLevels
ribiosPlot 1.1.9
- exprs-boxplot.Rscript: handle user-specified ylim values
ribiosPlot 1.1.8
- Distance function changed from dist to
robustDist
- Add documentation for color functions
- Substantially updated
biosHeatmap documentation
ribiosPlot 1.1.7
- coverage-plot.Rscript feature file improvements
ribiosPlot 1.1.6
- Add exprs-boxplot.Rscript for command line boxplots
ribiosPlot 1.1.5
- coverage-plot.Rscript supports sequence annotation
ribiosPlot 1.1.4
- Add -featurefile option to coverage-plot.Rscript
- Fix partial matching bug in
biosHeatmap
ribiosPlot 1.1.3
- Add coverage-plot.Rscript
ribiosPlot 1.1.2
- biosHeatmap.Rscript uses Ward as default clustering method
ribiosPlot 1.1.1
- geneset_xyplot.Rscript improvements
ribiosPlot 1.1.0
- Add
whiteblueblackheat to three-color palettes
ribiosPlot 1.0.9
- Add
whiteblack and blackwhite to two-color palettes
ribiosPlot 1.0.8
- Add
guessWH function for auto width/height ratio of heatmaps
- Margins automatically determined based on xlab/ylab
ribiosPlot 1.0.7
- biosHeatmap.Rscript: lwids and lheis options obsolete
ribiosPlot 1.0.6
- Data import taken over by ribiosIO::read_exprs_matrix
- Long titles wrapped in
biosHeatmap
ribiosPlot 1.0.5
- Add Rscript subdirectory for plotting scripts
ribiosPlot 1.0.4
- Export
colorpanel function
ribiosPlot 1.0.3
- Add zlim option to
biosHeatmap
ribiosPlot 1.0.2
ribiosPlot 1.0.1
- Margins automatically guessed
- Fine tuning of heatmap key plot parameters
ribiosPlot 1.0.0
- Initial release: refactor visualization functions from ribios package