Changes in version 1.3.0 (2026-02-25)                  

  - Initial CRAN submission
  - Package prepared for CRAN submission with comprehensive
    documentation
  - Depends on ribiosUtils (on CRAN)
  - Optional Vennerable integration for users who install it separately

                       Changes in version 1.1.30                        

  - Add royalredgrayblue and royalbluegrayred color palettes
  - plotPCA: xlim/ylim parameters auto-adjust for text labels
  - Add function getLims to get xlim/ylim values from vectors

                       Changes in version 1.1.29                        

  - compactPar more flexible to accept and pass parameters to par

                       Changes in version 1.1.28                        

  - Fix bug in heat function: return (n)

                       Changes in version 1.1.26                        

  - Add compactTrellis() and setCompactTrellis() for compact publication
    figures
  - Add function p2asterisk to map p values to asterisk symbols
  - Use roxygen2 for documentation

                       Changes in version 1.1.25                        

  - Add function fcbrewer for factor-matching colors
  - Improved manual pages
  - Rename sqlayout to squareLayout
  - Rename compPar to compactPar

                       Changes in version 1.1.24                        

  - biosHeatmap: cex main size better guessed

                       Changes in version 1.1.23                        

  - Add intRange and squareLayout
  - pdf2png works on UDIS machine

                       Changes in version 1.1.22                        

  - Add histMat to visualize matrices with histograms
  - Add plotPCA

                       Changes in version 1.1.20                        

  - Add qHist and xclipHist histogram functions

                       Changes in version 1.1.19                        

  - Add ribiosUtils to dependency list

                       Changes in version 1.1.18                        

  - Add pdf2png to convert PDF to PNG

                       Changes in version 1.1.17                        

  - Add cyanblackyellow and yellowblackyan color combinations
  - Add jitter.xyplot

                       Changes in version 1.1.16                        

  - brewer.pal.factor auto-adjusts color palette size
  - PCA plotting functions refactored

                       Changes in version 1.1.15                        

  - Update boxplot.Rscript with improved features

                       Changes in version 1.1.14                        

  - Add idev and ipdf functions for plotting in Rscripts
  - Add blackyellowred and blackgoldred color panels

                       Changes in version 1.1.13                        

  - exprs-boxplot.Rscript: accepts tab-delimited and gct files

                       Changes in version 1.1.12                        

  - exprs-boxplot.Rscript works with GCT files

                       Changes in version 1.1.11                        

  - Bug fix: boundNorm works with NAs

                       Changes in version 1.1.10                        

  - Fix typos in brewer.pal.factor and brewer.pal.factorLevels

                        Changes in version 1.1.9                        

  - exprs-boxplot.Rscript: handle user-specified ylim values

                        Changes in version 1.1.8                        

  - Distance function changed from dist to robustDist
  - Add documentation for color functions
  - Substantially updated biosHeatmap documentation

                        Changes in version 1.1.7                        

  - coverage-plot.Rscript feature file improvements

                        Changes in version 1.1.6                        

  - Add exprs-boxplot.Rscript for command line boxplots

                        Changes in version 1.1.5                        

  - coverage-plot.Rscript supports sequence annotation

                        Changes in version 1.1.4                        

  - Add -featurefile option to coverage-plot.Rscript
  - Fix partial matching bug in biosHeatmap

                        Changes in version 1.1.3                        

  - Add coverage-plot.Rscript

                        Changes in version 1.1.2                        

  - biosHeatmap.Rscript uses Ward as default clustering method

                        Changes in version 1.1.1                        

  - geneset_xyplot.Rscript improvements

                        Changes in version 1.1.0                        

  - Add whiteblueblackheat to three-color palettes

                        Changes in version 1.0.9                        

  - Add whiteblack and blackwhite to two-color palettes

                        Changes in version 1.0.8                        

  - Add guessWH function for auto width/height ratio of heatmaps
  - Margins automatically determined based on xlab/ylab

                        Changes in version 1.0.7                        

  - biosHeatmap.Rscript: lwids and lheis options obsolete

                        Changes in version 1.0.6                        

  - Data import taken over by ribiosIO::read_exprs_matrix
  - Long titles wrapped in biosHeatmap

                        Changes in version 1.0.5                        

  - Add Rscript subdirectory for plotting scripts

                        Changes in version 1.0.4                        

  - Export colorpanel function

                        Changes in version 1.0.3                        

  - Add zlim option to biosHeatmap

                        Changes in version 1.0.2                        

  - Add turyeb color palette

                        Changes in version 1.0.1                        

  - Margins automatically guessed
  - Fine tuning of heatmap key plot parameters

                        Changes in version 1.0.0                        

  - Initial release: refactor visualization functions from ribios
    package