Package: ribiosGraph 1.1.0
ribiosGraph: Manipulate and Visualize Graphs in the 'ribios' Software Suite
Tools to manipulate and visualize graphs (networks) for computational biology in drug discovery, for instance functions for creating bipartite graphs and for interactive visualizations. Zhang (2025) <https://github.com/bedapub/ribiosGraph>.
Authors:
ribiosGraph_1.1.0.tar.gz
ribiosGraph_1.1.0.zip(r-4.7)ribiosGraph_1.1.0.zip(r-4.6)ribiosGraph_1.1.0.zip(r-4.5)
ribiosGraph_1.1.0.tgz(r-4.6-any)ribiosGraph_1.1.0.tgz(r-4.5-any)
ribiosGraph_1.1.0.tar.gz(r-4.7-any)ribiosGraph_1.1.0.tar.gz(r-4.6-any)
ribiosGraph_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ribiosGraph/json (API)
NEWS
| # Install 'ribiosGraph' in R: |
| install.packages('ribiosGraph', repos = c('https://bedapub.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bedapub/ribiosgraph/issues
Last updated from:9f4e984e20. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 149 | ||
| source / vignettes | OK | 206 | ||
| linux-release-x86_64 | OK | 175 | ||
| macos-release-arm64 | OK | 102 | ||
| macos-oldrel-arm64 | OK | 101 | ||
| windows-devel | OK | 89 | ||
| windows-release | OK | 89 | ||
| windows-oldrel | OK | 100 | ||
| wasm-release | OK | 127 |
Exports:bipartite_graph_from_data_frameexportGMLincidence2bipartitelayout_as_bipartiteLRlist2incidenceMatrixplotlyBipartiteGraph
Dependencies:askpassbase64encbslibcachemclicpp11crosstalkcurldata.tabledigestdplyrevaluatefarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttrigraphisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMatrixmemoisemimeopensslotelpillarpkgconfigplotlypromisespurrrR6rappdirsRColorBrewerRcppribiosUtilsrlangrmarkdownS7sassscalesstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Create a bipartite graph from data frame | bipartite_graph_from_data_frame |
| Export igraph object to GML, friendly to Cytoscape and yEd | exportGML |
| Build a bipartite graph with an incidence matrix | incidence2bipartite |
| Layout a bipartite graph from left to right | layout_as_bipartiteLR |
| Convert a list of character strings into an incidence matrix | list2incidenceMatrix |
| Plot a bipartite graph using plot_ly | plotlyBipartiteGraph |
